PENJAR tBLASTn
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= query SelS_C.intestinalis.fa
         (204 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol...    37   0.003
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    34   0.025
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    32   0.12 
gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    29   0.61 
gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol...    28   1.0  
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    28   1.4  
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    26   6.8  

>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun
              sequence
          Length = 1278458

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
 Frame = -1

Query: 63     NIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERAR-------KKLQDRHDAAAREH 115
              N+E++      RRKT       +T +Q E R+ +  +A+       KKL+++    AR  
Sbjct: 368510 NLERTRIEADERRKT-------ITHQQEEERATSQYKAKLETEAYYKKLKEQESQNARML 368352

Query: 116    EERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQ---KPDPNQATQSHIKRNKESKP 172
              +++  +  EQ+ ++K N+ + L+  + QS+   KL Q   K    + T   IK  +E+  
Sbjct: 368351 KQQHDKFLEQEEIRKKNEREILEMKRRQSEYENKLQQENIKVRIREETIGRIKAERENAD 368172

Query: 173    LR 174
              +R
Sbjct: 368171 IR 368166



 Score = 31.2 bits (69), Expect = 0.16
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +2

Query: 101    RKKLQDRHDAAAREHEERLREQEEQKRMQKIN--DHDALKAGKTQSKTSKKLDQKPDPNQ 158
              + KLQ R     + +EER+RE++E +R++ I   + +     + ++K  K+L Q+   N+
Sbjct: 369374 KSKLQKRVTGKKKTYEERIREKKEIQRIRGIELAEKEERAKARKEAKERKRLKQQAKMNR 369553



 Score = 25.4 bits (54), Expect = 8.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 121     EQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSD 177
               E+EE    +K ND   L + + + +  KK +++ +        IKRNKE +  R  +
Sbjct: 1189802 EKEEDLLKRKENDDQELNSKREKEEEIKKKEKEEE--------IKRNKEEELKRKKE 1189656


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 33.9 bits (76), Expect = 0.025
 Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
 Frame = -2

Query: 61     WTNIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLR 120
              WT +  ++++    RK      +N    Q + R+   +RAR + + R     R H+ + +
Sbjct: 968458 WTTLLTNLRH----RKQKKVLLQNQRQNQQKQRARHRQRARHRQRARRQQKERAHQGKGK 968291

Query: 121    EQEEQKRMQKINDHDALKAGKTQSKTSKK----LDQKPDPNQATQSHIKRNKESKPLRSS 176
              + +E++ +Q   DH   K  + +    K+    L+++ + +Q  Q+  +R +    +R  
Sbjct: 968290 DLQEERVLQGEKDHQVGKDPQQEKDPQKERQGNLEERQEVSQVVQN--RRQRSYIGIRLR 968117

Query: 177    DFSPLGGGPSNSARW 191
               F    G   N + W
Sbjct: 968116 IFKVQFGILKNQSSW 968072



 Score = 26.9 bits (58), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 9      PGDPNTAGSAGNQGPLINENPYVMMSVFNQGLAFLQAY 46
              PG P   G  G+QG L+  NP++MM   +     L A+
Sbjct: 957797 PGVPGVPGVPGSQGGLV--NPFLMMQRMSAANPMLLAF 957904


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
              sequence
          Length = 1344712

 Score = 31.6 bits (70), Expect = 0.12
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
 Frame = +1

Query: 75     RKTYYDDTENM-TPEQVEARSVAMERARKKLQDRHDAAAREH------------------ 115
              RK   ++T  M   + +E R+  +     KLQ+ HD+ +RE+                  
Sbjct: 606706 RKMELNNTSLMLNVDNLEKRNHEIVERCSKLQEDHDSLSREYNKLYQKYTALLSEYTASK 606885

Query: 116    --EERLR----EQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKE 169
                EE L     E ++  +   I   D  +  KT S T + L+Q  + N      I   KE
Sbjct: 606886 KNEENLNASLVELQDINKKLDIEGRDMKEKYKTLSATERVLEQLQESNAELIGEISALKE 607065

Query: 170    SKPLRSSDFSPL 181
               + + S+D+  L
Sbjct: 607066 ERDILSADYKIL 607101



 Score = 29.6 bits (65), Expect = 0.47
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -1

Query: 109    DAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNK 168
              +++  E E+   +QEE  +     D   +    +  ++  K D+    N+   S  K NK
Sbjct: 325879 ESSELELEQEEMQQEESNKDTNSGDSTIMDGLNSFLESLTKKDRDETLNEKESSIDKINK 325700

Query: 169    ESKPLRSSDFS 179
              E+KPL ++ F+
Sbjct: 325699 ETKPLNTTTFT 325667



 Score = 27.3 bits (59), Expect = 2.3
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 1/116 (0%)
 Frame = +1

Query: 82     TENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKI-NDHDALKAG 140
              +E   PE+ +      E ++ +     +A   E         E K ++ I N  D LK  
Sbjct: 670861 SEEAKPEETKPDEKNPEESKPEETKPEEAKHDEENSGKGNSTEPKSLESIENSKDDLKKE 671040

Query: 141    KTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNS 196
                   +S K   + + N+++ S    NK+      +    L    +++   + GNS
Sbjct: 671041 DKSEDSSAKESTEENSNKSSDSEADANKDFSSSEVAQEEDLASESTDNLNDQTGNS 671208



 Score = 26.2 bits (56), Expect = 5.2
 Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +3

Query: 89     QVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRM---QKINDHDALKAGKTQSK 145
              +V+  SV   +  +K+   ++ + +E E+ L+ + + K M    + N ++ L+     S+
Sbjct: 382008 EVDIISVISYKKDQKVAS-NEYSMKEEEDVLKNEIDYKSMCISTQTNSNENLQLLTICSE 382184

Query: 146    TSKKLDQKPDPNQATQSHIKRNKE 169
              T+  + Q   PN  T + +  N+E
Sbjct: 382185 TNVNITQNKKPNSVTSNSLVVNRE 382256


>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun sequence
          Length = 1099352

 Score = 29.3 bits (64), Expect = 0.61
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
 Frame = -1

Query: 80      DDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKI------ND 133
               D + +   EQ +  S A    +K + +   +++    +   E E+ K+  K       N 
Sbjct: 1030604 DSSSSSEDEQPKKNSKAATPMKKNISNSSSSSSSSDSDSSSEDEQPKKNAKAATPMKKNI 1030425

Query: 134     HDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSAR 190
                ++     + S +S   D+KP  N    +     K      SSD S      S++ +
Sbjct: 1030424 SNSSSDSSSSSDSSSSEDEKPKKNTKAAASTTAKKAMSDSSSSDSSSSSDSESDNEK 1030254


>gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun
              sequence
          Length = 1080900

 Score = 28.5 bits (62), Expect = 1.0
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
 Frame = +1

Query: 81     DTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAG 140
              D EN         S  +  +   L  + + +  E   ++ E E ++  + +++    K+ 
Sbjct: 358018 DRENAAGINRGYPSKHISMSTSNLNGKSEYSLLELVSQMTESESEEENENLSNLP--KSN 358191

Query: 141    KTQSKT------SKKLDQKPDPNQATQSHIKRNKESKPLRS 175
              K++SK       SKK   KPD NQATQ   K N+ S  L S
Sbjct: 358192 KSRSKGLFGRIFSKKKKNKPDENQATQFK-KTNRFSFNLNS 358311



 Score = 28.1 bits (61), Expect = 1.4
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 18/73 (24%)
 Frame = -2

Query: 122   QEEQKRMQKINDHDALKAGKTQSK------------------TSKKLDQKPDPNQATQSH 163
             QE+++  +KIN +  LK  KT SK                    KK+D+    +    + 
Sbjct: 62672 QEKEEISRKINKNSGLKTKKTISKKKDDIKTKTNQSDKSKKKVLKKIDKNKSQDNLKNTS 62493

Query: 164   IKRNKESKPLRSS 176
             IK+N+ ++  +SS
Sbjct: 62492 IKKNQSTEKKKSS 62454



 Score = 26.6 bits (57), Expect = 4.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 40      LAFLQAYGWFLLFGFVAAMFVWTNIEKSVKNLFGRRKTYYDD 81
               +AFL  Y  FLLF F  ++F   +  K+ K +    K ++++
Sbjct: 1068721 IAFLSLYFCFLLFYFNLSLFFLQDTIKN*KTILIEEKIFFEE 1068846



 Score = 25.8 bits (55), Expect = 6.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 120   REQEEQKRMQKINDHDALKAG-KTQSKTSKKLDQKP 154
             RE+  Q R  KI    ++ A  +T SKTS   DQ+P
Sbjct: 14599 RERRNQARNSKIFPTQSVVASVETSSKTSSSSDQRP 14492


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +1

Query: 103    KLQDRHDAAAREHEERLREQEEQKRMQKIN-----DHDALKAGKTQSKTSKKLDQKPDPN 157
              ++QD      +E E +  ++ EQ+  Q++      D D  +  + + +   +L+Q+P+P+
Sbjct: 106618 QIQDLEPEKEQEQEHQSEQEPEQEPEQELEHEPDQDQDQEQKPEQEPERQPELEQEPEPD 106797

Query: 158    Q 158
              Q
Sbjct: 106798 Q 106800



 Score = 27.7 bits (60), Expect = 1.8
 Identities = 22/120 (18%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
 Frame = +1

Query: 62     TNIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAA-AREHEERLR 120
              +NIE  + ++ G  K      EN   +Q +   +  E  +++  D +    + +HE+  +
Sbjct: 106423 SNIEPKLDSILGLEKI----EENDESKQEQVILIDSEEIKEQKNDIYLIEDSGKHEDGFK 106590

Query: 121    EQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSP 180
              + E  +   +I D +  K  + + ++ ++ +Q+P+     +    +++E KP +  +  P
Sbjct: 106591 KTEVGQFEGQIQDLEPEKEQEQEHQSEQEPEQEPEQELEHEPDQDQDQEQKPEQEPERQP 106770


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 25/105 (23%), Positives = 45/105 (42%)
 Frame = -1

Query: 49     FLLFGFVAAMFVWTNIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRH 108
              FLL  +    ++W +   S +N    R      T N T  Q    S+  +   ++L  + 
Sbjct: 413737 FLLVNYYITKWIWGSNLTSSQNEGSTRGHEILTTINTTDNQKLNNSLKRKIRIEELASKQ 413558

Query: 109    DAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQK 153
                 A++  +  RE  E K+  K     A+K    ++K +KK+ +K
Sbjct: 413557 LINAKQARKHRREAYEAKQRLK-----AVKCELHENKINKKVLEK 413438


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,481,426
Number of Sequences: 8
Number of extensions: 17015
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 78
length of query: 204
length of database: 3,034,108
effective HSP length: 87
effective length of query: 117
effective length of database: 3,033,412
effective search space: 354909204
effective search space used: 354909204
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)